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SW4STM32 and SW4Linux fully supports the STM32MP1 asymmetric multicore Cortex/A7+M4 MPUs

   With System Workbench for Linux, Embedded Linux on the STM32MP1 family of MPUs from ST was never as simple to build and maintain, even for newcomers in the Linux world. And, if you install System Workbench for Linux in System Workbench for STM32 you can seamlessly develop and debug asymmetric applications running partly on Linux, partly on the Cortex-M4.
You can get more information from the ac6-tools website and download (registration required) various documents highlighting:

System Workbench for STM32


Dual processor simultaneous debug setup?

I don’t know why you have to pause the controller “simultaneously” ? As I had mentioned early, if you pause the controller on SPI Master side first, will SPI clock stop? If so, no data passing through SPI and it is safe to pause controller on Slave side after then.