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SW4STM32 and SW4Linux fully supports the STM32MP1 asymmetric multicore Cortex/A7+M4 MPUs

   With System Workbench for Linux, Embedded Linux on the STM32MP1 family of MPUs from ST was never as simple to build and maintain, even for newcomers in the Linux world. And, if you install System Workbench for Linux in System Workbench for STM32 you can seamlessly develop and debug asymmetric applications running partly on Linux, partly on the Cortex-M4.
You can get more information from the ac6-tools website and download (registration required) various documents highlighting:

System Workbench for STM32


Multiple targets flashing with openocd

Hello,
And why not using STLink utility CLI (on windows) or the new Cube Programmer (all Oses).
You could call the CLI exe from your tool software.
But it is the same approach using the STLINK S/N to select the ID.

Not using S/N, you could use the STVP_CMdLine.exe for windows only.
ST Visual Programmer can program STM32 and with the CLI, you can use an option “NbTools” to loop on all STLink connected.
It will program your appli on all targets automatically.
ST toolset Install available here :
http://www.st.com/content/st_com/en/products/development-tools/software-development-tools/stm32-software-development-tools/stm32-programmers/stvp-stm32.htmlQuestion

Rgds,
Laurent