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SW4STM32 and SW4Linux fully supports the STM32MP1 asymmetric multicore Cortex/A7+M4 MPUs

   With System Workbench for Linux, Embedded Linux on the STM32MP1 family of MPUs from ST was never as simple to build and maintain, even for newcomers in the Linux world. And, if you install System Workbench for Linux in System Workbench for STM32 you can seamlessly develop and debug asymmetric applications running partly on Linux, partly on the Cortex-M4.
You can get more information from the ac6-tools website and download (registration required) various documents highlighting:

System Workbench for STM32


System Workbench for STM32 installation and configuration on Linux

searching around, I saw there someone has mentioned that “SWT_GTK3=0 /yourpath/eclipse &”
to fix one of GTK related issue.

I tried it and it fix my problem.
Now I can change the project properties and run debugging my STM32F0Discovery board through OpenOCD/STLinkv2 .

Hope this will help someone.