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SW4STM32 and SW4Linux fully supports the STM32MP1 asymmetric multicore Cortex/A7+M4 MPUs

   With System Workbench for Linux, Embedded Linux on the STM32MP1 family of MPUs from ST was never as simple to build and maintain, even for newcomers in the Linux world. And, if you install System Workbench for Linux in System Workbench for STM32 you can seamlessly develop and debug asymmetric applications running partly on Linux, partly on the Cortex-M4.
You can get more information from the ac6-tools website and download (registration required) various documents highlighting:

System Workbench for STM32


Linux: Import source file in AC6 use weird directory structure

You may not change and move files via your Linux file manager while you are working in Eclipse.

You cannot start editing files with gedit or any other text editor while your project is open in Eclipse.

Work from Eclipse and no where else.

The file tree in Eclipse does not necessary equate the directory structure in your file system. Please be aware of this.

As a beginner always have your libraries copied inside your project, thus NOT as external libraries or references. Later on, when you get used to dependencies these can be referenced instead.

You seem to have a funny Linux. ‘Linux being difficult about empty spaces’, I never heard of this before.

Good luck!

Greets,
Ben